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Author Topic: Finally DNA testing of Greeks
xyyman
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Finally DNA testing of Greeks.


Do you want to know WHY they are not testing ancient Greeks?


HLA genes in Macedonians and the sub-Saharan origin of the Greeks - A. Arnaiz-Villena

Abstract:
HLA alleles have been determined in individuals from the Republic of Macedonia by DNA typing and sequencing. HLA-A, -B, -DR, -DQ allele frequencies and extended haplotypes have been for the first time determined and the results compared to those of other Mediterraneans, particularly with their neighbouring Greeks. Genetic distances, neighbor-joining dendrograms and correspondence analysis have been performed. The following conclusions have been reached: 1) Macedonians belong to the “older” Mediterranean substratum, like Iberians (including Basques), North Africans, Italians, French, Cretans, Jews, Lebanese, Turks (Anatolians), Armenians and Iranians, 2) Macedonians are not related with geographically close Greeks, who do not belong to the “older” Mediterranenan substratum, 3) Greeks are found to have a SUBSTANTIAL relatedness to sub-Saharan (Ethiopian) people, which separate them from other Mediterranean groups. Both Greeks and Ethiopians share quasi-specific DRB1 alleles, such as *0305, *0307, *0411, *0413, *0416, *0417, *0420, *1110, *1112, *1304 and *1310. Genetic distances are closer between Greeks and Ethiopian/sub-Saharan groups than to any other Mediterranean group and finally Greeks cluster with Ethiopians/sub-Saharans in both neighbour joining dendrograms and correspondence analyses. The time period when these relationships might have occurred was ancient but uncertain and might be related to the displacement of Egyptian-Ethiopian people living in pharaonic Egypt.

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xyyman
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@Capra. I did not make up the Title ....honest! He! HE! HE! You people.

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capra
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Lol no kidding. Are the authors Macedonian and trying to troll Greeks?

Mycenaean samples are supposedly on the way. I'm going to go out on a limb and say they won't be Ethiopian. [Big Grin]

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Punos_Rey
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Really xyyman? :l


quote:
Arnaiz-Villena et al. published five scientific articles, where, among other claims, they concluded that the Greek population originates from Sub-Saharan Africa and do not cluster with other Mediterraneans.[7][13][14][15][16] The explanation they offered is that a large number of Sub-Saharans had migrated to Greece (but not to Crete) during Minoan times,[7][13][14][15] i.e. predating both Classical and Mycenaean Greece. Those conclusions were related to the "Black Athena" debate and became embroiled in disputes between Greek and ethnic Macedonian nationalists.[17]

They cited Dörk et al. for having found a marker on Chromosome 7 that is common to Black Africans and, among Caucasoid populations, is found only in Greeks.[13][18] Dörk et al. did find an African-type of cystic fibrosis mutation in Greeks, however this mutation was extremely rare; it was detected only in three Greek families.[18] The explanation they offered is quite different from Arnaiz-Villena's. Dörk et al. state: "Historical contacts—for example, under Alexander the Great or during the ancient Minoan civilization—may provide an explanation for the common ancestry of disease mutations in these ethnically diverse populations."[18]

Hajjej et al. claimed to have confirmed the genetic relatedness between Greeks and Sub-Saharans.[19][20] However they used the same methodology (same gene markers) and same data samples like Arnaiz-Villena et al.[7][14][19][20]

Other authors contradict Arnaiz-Villena's results. In The History and Geography of Human Genes (Princeton, 1994), Cavalli-Sforza, Menozzi and Piazza grouped Greeks with other European and Mediterranean populations based on 120 loci (view MDS plot[21]). Then, Ayub et al. 2003[22] did the same thing using 182 loci (view dendrogram[23]).[24] Another study was conducted in 2004 at Skopje's University of Ss. Kiril and Metodij, using high-resolution typing of HLA-DRB1 according to Arnaiz-Villena's methodology. Contrary to Arnaiz-Villena's conclusion, no sub-Saharan admixture was detected in the Greek sample.[24]

In a sample of 125 Greeks from Thessaloniki and Sarakatsani, 2 Asian-specific mtDNA sequences (M and D) were detected (1.6%). No sub-Saharan African genes were observed in this population, therefore, non-Caucasoid maternal ancestry in Greece is very low, as elsewhere in Europe.[25] Additionally, in a sample of 366 Greeks from thirteen locations in continental Greece, Crete, Lesvos and Chios, a single African haplogroup A Y Chromosome was found (0.3%). This marks the only instance to date of sub-Saharan DNA being discovered in Greece. In another sample of 42 Greeks, one sequence of the Siberian Tat-C haplogroup turned up, while other studies with larger sample populations have failed to detect this paternal marker in the Greek gene pool[26][27] and while its frequencies are actually much higher in Scandinavian and Slavic populations.[28][29] Also, a paper has detected clades of haplogroups J and E3b that were likely not part of pre-historic migrations into Europe, but rather spread by later historical movements. Greeks possess none of the lineages denoting North African ancestry within the last 5000 years and have only 2% (3/148) of the marker J-M267, which may reflect more recent Middle Eastern admixture.[30]

Jobling et al., in their genetics textbook "Human Evolutionary Genetics: Origins, Peoples & Disease", state that Arnaiz-Villena’s conclusions on the Sub-Saharan origin of Greeks, is an example of arbitrary interpretation and that the methodology used is not appropriate for this kind of research.[31] Karatzios C. et al., made a systematic review of genetics and historical documents, showing great flaws in Arnaiz-Villena’s methodology and theory on the Greeks/Sub-Saharan genetic relationship.[32]

Three respected geneticists, Luca Cavalli-Sforza, Alberto Piazza and Neil Risch, criticised Arnaiz-Villena's methodology.[33] They stated that "Using results from the analysis of a single marker, particularly one likely to have undergone selection, for the purpose of reconstructing genealogies is unreliable and unacceptable practice in population genetics. The limitations are made evident by the authors’ extraordinary observations that Greeks are very similar to Ethiopians and east Africans but very distant from other south Europeans; and that the Japanese are nearly identical to west and south Africans. It is surprising that the authors were not puzzled by these anomalous results, which contradict history, geography, anthropology and all prior population-genetic studies of these groups." Arnaiz-Villena et al. countered this criticism in a response, stating "single-locus studies, whether using HLA or other markers, are common in this field and are regularly published in the specialist literature".

https://en.m.wikipedia.org/wiki/Antonio_Arnaiz-Villena

And,

quote:
In 2002, Arnaiz-Villena was suspended without pay from the Hospital 12 de Octubre after being charged with embezzlement of funds thought to exceed EUR 300,000.[51] An audit of the section that Arnaiz directed found accounting irregularities of at least EUR 861,000.[52] Arnaiz-Villena was also accused of the "purchase of products not used in his department's health care activities; purchase of hospital products used in health care activities but in quantities much greater than needed; falsification of statistical data apparently to justify purchases; humiliating treatment of department staff; delay in health care activities; and transfer of department products to the university."[53] In March 2003, judges canceled his suspension, ruling it violated the presumption of innocence, and permitting him to return to his post.[54] However, in November 2003 the Court of Administrative Litigation No. 8 of Madrid confirmed the non-criminal charges and sentenced him to 33 months of suspension from work without pay. It did not consider the charge of embezzlement, which was still pending.[55]

Arnaiz-Villena denied all charges against him, saying he was the victim of a "public lynching", suggesting that the charges may have a political motivation connected with the Human Immunology scandal. Both the hospital and the university stated that the charges had nothing to do with the Human Immunology affair. Arnaiz-Villena said he was prepared to "go to Strasbourg" to prove his innocence. Though suspended from the hospital, he continued his work at the University.

Between you, Mike and Cass (and all of his ilk) I'm still not sure who the worst poster on this forum is as much as I despise Cass and all like him.
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xyyman
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@Punk-Ray

What is your problem? I am only the messenger. I didn't give the study the title I am only citing it. He! hE! HE!

@Capra - Same. I am only the messenger. It only LOOKS! Like I wrote it. HE! You do realize I am right. Europeans are depigmented Africans. And they ahve known this a long time ago. Check the date out on the OP? SMH.

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Ase
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quote:
Originally posted by xyyman:
Finally DNA testing of Greeks.


Do you want to know WHY they are not testing ancient Greeks?


HLA genes in Macedonians and the sub-Saharan origin of the Greeks - A. Arnaiz-Villena

Abstract:
HLA alleles have been determined in individuals from the Republic of Macedonia by DNA typing and sequencing. HLA-A, -B, -DR, -DQ allele frequencies and extended haplotypes have been for the first time determined and the results compared to those of other Mediterraneans, particularly with their neighbouring Greeks. Genetic distances, neighbor-joining dendrograms and correspondence analysis have been performed. The following conclusions have been reached: 1) Macedonians belong to the “older” Mediterranean substratum, like Iberians (including Basques), North Africans, Italians, French, Cretans, Jews, Lebanese, Turks (Anatolians), Armenians and Iranians, 2) Macedonians are not related with geographically close Greeks, who do not belong to the “older” Mediterranenan substratum, 3) Greeks are found to have a SUBSTANTIAL relatedness to sub-Saharan (Ethiopian) people, which separate them from other Mediterranean groups. Both Greeks and Ethiopians share quasi-specific DRB1 alleles, such as *0305, *0307, *0411, *0413, *0416, *0417, *0420, *1110, *1112, *1304 and *1310. Genetic distances are closer between Greeks and Ethiopian/sub-Saharan groups than to any other Mediterranean group and finally Greeks cluster with Ethiopians/sub-Saharans in both neighbour joining dendrograms and correspondence analyses. The time period when these relationships might have occurred was ancient but uncertain and might be related to the displacement of Egyptian-Ethiopian people living in pharaonic Egypt.

so ...no coalescence time. mhh.. idk...

Wiki sure will deconstruct authors with a message it's contributors don't like. Sure wish it'd deconstruct questionable research about "other" parts of the world sometimes...

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xyyman
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BTW - If some of you are still not getting it. The "ass" is Ethiopian also. ......see thread.


:D :eek:

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Punos_Rey
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The only ass I see is you.

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Meet on the Level, act upon the Plumb, part on the Square.

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xyyman
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So. He was publicly lynched for stating the truth. They haven't disproved his hypothesis instead they tarnished him and his reputation. Character assassination and attempt of imprisonment instead of debunking his work. That's what they do. BTW single locus studies are similar to STRs.

QUOTE: " non-Caucasoid maternal ancestry in Greece is very low" but they haven't denied paternal ancestry.

Sides...the jackass is African. Will they try to "frame" the jacksass. loL!

Quote: " E3b that were likely not part of pre-historic migrations into Europe" - we know that is not true now.

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capra
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Oh we get it, xyyman. You'll pull out any scrap that fits your narrative, however obsolete, however totally contradicted by a mass of better evidence, trumpet how it supports you, and totally ignore everything else. Because if it makes you feel good in your tummy, it must be right.

And then post "finally" about a paper written in 2001. This is dumb even for you.

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xyyman
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Punk-Ray. Thanks for letting me on this. I did not know. So it seems like that is the MO. Threaten the geneticist who has work that has African DNA in ancient Europe. That is why Henn, Fernandez and other seem to either disappear from the world of genetics or they gotta fall in line or get paid off or careers threatened.
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There's very little Sub-Saharan African genetic component (1-3%) in Southern Europeans, but a larger North African component (but still modest), consistent with Spain's close geography to the Maghreb coast. A 2013 study by Botigué et al and a 2014 study by Lazaridis et al. both estimated around 12% North African mixture in the Spanish population (as a whole), but if you divided Spanish samples with geography, those in the south are as high as 20%, while those in the north as little as 4%. This is again expected consistent with a cline.
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xyyman
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^ Did you write that yourself? Explain your position on Villabrna being tropical based upon limb proportion ...and his relatives.

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xyyman
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quote: "This is again expected consistent with a cline."

Do you realize you just agreed with me? cline=IBD

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Thereal
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Can you clarify what you mean by "depigmented",albinism,vitiligo?
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xyyman
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depigmented=albinism. I agree with Mike it is Albinism based upon LD on the key chromosome involved and melanin synthesis pathway, but that is an extensive story.

Vitiligo is a different ailment afaik

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Without data you are just another person with an opinion - Deming

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Lawaya
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hmm
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Copied my post in other thread.
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the lioness,
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quote:
Originally posted by Thereal:
Can you clarify what you mean by "depigmented",albinism,vitiligo?

In other words people like Donald Trump need to admit they're light skinned Africans whose ancestors lived in Africa less than 9,000 years ago, not Europe or Central Asia. Modern Europeans are closet Africans
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Ish Geber
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quote:
Originally posted by the lioness,:
quote:
Originally posted by Thereal:
Can you clarify what you mean by "depigmented",albinism,vitiligo?

In other words people like Donald Trump need to admit they're light skinned Africans whose ancestors lived in Africa less than 9,000 years ago, not Europe or Central Asia. Modern Europeans are closet Africans
If that's the case, would that be a problem?


 -

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the lioness,
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^^ Why don't you make a thread on this instead of waiting for me to do it?
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Ish Geber
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quote:
Originally posted by the lioness,:
^^ Why don't you make a thread on this instead of waiting for me to do it?

I am waiting for you...? 😂

Why would I wait for your fake ass?

quote:

Whereas inferred IBD sharing does not indicate directionality, the North African samples that have highest IBD sharing with Iberian populations also tend to have the lowest proportion of the European cluster in ADMIXTURE (Fig. 1), e.g., Saharawi, Tunisian Berbers, and South Moroccans. For example, the Andalucians share many IBD segments with the Tunisians (Fig. 3), who present extremely minimal levels of European ancestry. This suggests that gene flow occurred from Africa to Europe rather than the other way around.

[...]

Alternative models of gene flow: Migration(s) from the Near East likely have had an effect on genetic diversity between southern and northern Europe (discussed below), but do not appear to explain the gradients of African ancestry in Europe. A model of gene flow from the Near East into both Europe and North Africa, such as a strong demic wave during the Neolithic, could result in shared haplotypes between Europe and North Africa. However, we observe haplotype sharing between Europe and the Near East follows a southeast to southwest gradient, while sharing between Europe and the Maghreb follows the opposite pattern (Fig. 2); this suggests that gene flow from the Near East cannot account for the sharing with North Africa.

--Laura R. Botiguéa,1, Brenna M. Henn et al

Gene flow from North Africa contributes to differential human genetic diversity in southern Europe (July 16, 2013)

Silliness...

quote:
Haplogroup H dominates present-day Western European mitochondrial DNA variability (>40%), yet was less common (~19%) among Early Neolithic farmers (~5450 BC) and virtually absent in Mesolithic hunter-gatherers.

Here we investigate this major component of the maternal population history of modern Europeans and sequence 39 complete haplogroup H mitochondrial genomes from ancient human remains. We then compare this 'real-time' genetic data with cultural changes taking place between the Early Neolithic (~5450 BC) and Bronze Age (~2200 BC) in Central Europe. Our results reveal that the current diversity and distribution of haplogroup H were largely established by the Mid Neolithic (~4000 BC), but with substantial genetic contributions from subsequent pan-European cultures such as the Bell Beakers expanding out of Iberia in the Late Neolithic (~2800 BC). Dated haplogroup H genomes allow us to reconstruct the recent evolutionary history of haplogroup H and reveal a mutation rate 45% higher than current estimates for human mitochondria.

--Brotherton P1, Haak W, Templeton J,

Nat Commun. 2013;4:1764. doi: 10.1038/ncomms2656.

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans

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xyyman
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 -

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