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Author Topic: Global skin colour prediction from DNA
the lioness,
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https://repub.eur.nl/pub/99872/REPUB_99872-OA.pdf

Global skin colour prediction from DNA

Susan Walsh1 · Lakshmi Chaitanya2 · Krystal Breslin1 · Charanya Muralidharan1 · Agnieszka Bronikowska3 · Ewelina Pospiech4,5 · Julia Koller2 · Leda Kovatsi6 · Andreas Wollstein7 · Wojciech Branicki5,8 · Fan Liu2,9,10 · Manfred Kayser2
Received: 14 February 2017 / Accepted: 3 May 2017


Susan Walsh1 · Lakshmi Chaitanya2 · Krystal Breslin1 · Charanya Muralidharan1 · Agnieszka Bronikowska3 · Ewelina Pospiech4,5 · Julia Koller2 · Leda Kovatsi6 · Andreas Wollstein7 · Wojciech Branicki5,8 · Fan Liu2,9,10 · Manfred Kayser2
Received: 14 February 2017 / Accepted: 3 May 2017

deviation were 0.97 ± 0.02 for Light, 0.83 ± 0.11 for Dark, and 0.96 ± 0.03 for Dark-Black. When using a 5-category, this resulted in 0.74 ± 0.05 for Very Pale, 0.72 ± 0.03 for Pale, 0.73 ± 0.03 for Intermediate, 0.87±0.1 for Dark, and 0.97 ± 0.03 for Dark-Black. A comparative analysis in 194 independent samples from 17 populations demon- strated that our model outperformed a previously proposed 10-SNP-classifier approach with AUCs rising from 0.79 to 0.82 for White, comparable at the intermediate level of 0.63 and 0.62, respectively, and a large increase from 0.64 to 0.92 for Black. Overall, this study demonstrates that the chosen DNA markers and prediction model, particularly the 5-category level; allow skin colour predictions within and between continental regions for the first time, which will serve as a valuable resource for future applications in forensic and anthropologic genetics.


Conclusions
Overall, we demonstrate that global skin colour, between and within continental groups, can be accurately predicted from DNA using a set of 36 carefully selected SNPs from 16 genes. The DNA markers and the model introduced here deliver prediction accuracies already high enough for prac- tical applications, although for the three different light skin colour categories, they may be further improved with addi- tional (but currently unknown) SNP predictors once identi- fied via future GWAS’s. We envision that if combined with the previously established eye and hair colour predicting SNPs, such as those from the IrisPlex and HIrisPlex sys- tems, all three human pigmentation traits can be reliably predicted from DNA in future forensic and anthropological applications.


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https://link.springer.com/content/pdf/10.1007/s00439-017-1817-4.pdf

Erratum to: Global skin colour prediction from DNA

Unfortunately, during the typesetting the Table 2 column head has been incorrectly aligned. The corrected Table 2 is given below:
We apologize for any inconveniences caused


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Ish Geber
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Did any Africana-chemist participate in the study?
Posts: 22234 | From: האם אינכם כילדי הכרית אלי בני ישראל | Registered: Nov 2010  |  IP: Logged | Report this post to a Moderator
Doug M
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Of course, this can help, but overall people must remember that the further you go back in history, the darker populations get with tropical Africa the modal "base" of human skin color.
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Ish Geber
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"12-Nigeria, 14-Nigeria". Lioness, is that correct?
Posts: 22234 | From: האם אינכם כילדי הכרית אלי בני ישראל | Registered: Nov 2010  |  IP: Logged | Report this post to a Moderator
   

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