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ElMaestro was correct - The Abusir dataset is manipulated
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[QUOTE]Originally posted by xyyman: [QB] ElMaestro was correct - The Abusir data is manipulated During my "ban" here on ES I was able to hone in my skills and confirm that the Abusir dataset was manipulated and the CODIS STR was removed.......deliberately This is what I worked on and posted on ESR http://egyptsearchreloaded.proboards.com/thread/2766/abusir-strs-finally-africans?page=4&scrollTo=18544 I can confirm that CODIS STR which shows geographic affinity like with the King Tuts Amarnas was REMOVED!!! From the Abusir..at least for JK2888 @ THO1 Chromosome 11 and TPOX @ Chromosome 2. I can now map out the entire genome of many samples and confirm whether the author is ling or not and expose some of the tricks they are too. I am not sure how ElMaestro knew it was removed unless he did the analysis like I just did but he was correct. (He is not sharing info?) They are not there. I haven't pulled up all the CODIS STR's but from what I pulled out so far...the CODIS STR is NOT there in the Abusir unlike the Amarna's. To those who want to do a deep dive. Here is some help at ESR but in Summary Anyways. A major break through!!!!!! I have it...sort of. Well it looks like the CODIS STRs were indeed "removed' from the Abusir before they were made "freely" available on-line. I have NOT completed the entire dataset but the fact is some if not all the CODIS STR is not there. I did not need LobSTR software. The BAmAnalysis kit cited above did the trick. Anyone can do it. This is how Here is the process: 1. Run the BAMAnaylsis Software as described above(Windows based). And obtain the VCF files for the Abusirs. 2. Use MS Excel to open the VCF files. You can open one Chromosome VCF file at a time. In this example I used Chr 2 3. The region of interest and CODIS repeats can be obtained manually or visually see table below. Eg [b]TPOX CODIS lies in region 1493425 - 1493456 on Chromosome 2.[/b] 4. As you can see that region is NOT there....In other words it was either "removed' deliberately or not recoverable via aDNA degradation. 5. If we do this analysis for ALL CODIS STR and they are not present for ALL Abusir then we can safely assume it was removed for nefarious reasons. 6. Some of the Abusir aDNA was removed or deleted. My guess it is the "African" portion So what ElMaestro hinted at was correct. The CODIS STR DNA material was removed. Yes, they learnt from their mistake with the Amarnas. It took me almost 2 months working on this. Sage I know you are meticulous and patient and this is what is needed. But we have to find another way.. I am thinking TreeMix or some other software. TreeMix should be able to identify the "parental" population between the Abusir and Africans. I will do a couple more Abusirs to confirm the CODIS data was removed deliberately If it was removed we can assume the result...they skewed the results by removing the CODIS STR data. Anyways I am a little embarrassed. I had the answer in front of me a few weeks ago and missed it. Here is the result... [IMG]https://i.postimg.cc/DzQS18K3/Abusir-JK2888bam-analysis.jpg[/IMG] [IMG]https://i.postimg.cc/QCqGM8sq/Codis-Location-Chr.jpg[/IMG] [IMG]https://i.postimg.cc/15xHpR4R/Abusir-JK2888bam-analysis-THO1.jpg[/IMG] [/QB][/QUOTE]
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