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ElMaestro was correct - The Abusir dataset is manipulated
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[QUOTE]Originally posted by xyyman: [QB] Again put another way.... The process: 1. download the Bam files for the Abusir. 2. Using appropriate Software in Windows or Ubuntu(preferred) index the file. Samtools, BamAnaylsis Kit, Picaud Tools etc to get the *.VCF file 3. Pull up the VCF file in Excel and go to the Chromosome of interest and location. The locations for the CODIS STR can be found on-line and is in that 2nd Table. 4. The CODIS STR are NOT there! It was deleted by the researchers. We now need to run ADMIXTURE to our repertoire and TreeMix. Just started getting my head around TreeMIx. Why TreeMix and other tools? "DIRECTION" of migration can be determined through these applications!!! [/QB][/QUOTE]
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