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the lioness,
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Africans' ability to digest milk linked to spread of cattle raising
A new research led by College of Pennsylvania scientists -- constituting the largest evaluation at any time of lactase persistence in geographically numerous populations of Africans -- investigated the genetic origins of this trait and delivers aid to the...


A new research led by College of Pennsylvania scientists -- constituting the largest evaluation at any time of lactase persistence in geographically numerous populations of Africans -- investigated the genetic origins of this trait and delivers aid to the notion that the potential to digest milk was a highly effective selective power in a selection of African populations which raised cattle and eaten the animals' fresh new milk.

The investigate was led by Alessia Ranciaro, a postdoctoral fellow in Penn's Division of Genetics in the Perelman College of Medication, and Sarah Tishkoff, a Penn Integrates Information Professor with appointments in Penn Medicine's Office of Genetics and Penn Arts and Sciences' Office of Biology.

The paper will be revealed March 13 in the American Journal of Human Genetics.

Previous investigate had revealed that northern Europeans and men and women with northern European ancestry, as very well as populations from Africa, the Arabian Peninsula and Central Asia with a custom of new milk manufacturing and consumption, continue on to express the lactase enzyme into adulthood. Some of these earlier scientific studies experienced traced the genetic origin of this trait in Europeans to a specific mutation that regulates the expression of the gene that codes for lactase. And in 2007 a examine by Tishkoff, Ranciaro and colleagues examined African populations and uncovered a few addition genetic variants connected with lactase persistence that had not been beforehand discovered.

"But these variants did not absolutely account for the explanation why some Africans were in a position to digest milk," Ranciaro stated.

To test to reconcile these obvious discrepancies in between genotype, the genetic basis of a characteristic, and phenotype, the attribute alone, Ranciaro, together with colleagues, led discipline reports to often-remote locations of Kenya, Tanzania and Sudan to gather blood samples and carry out a lactose tolerance take a look at on men and women from varied ethnic backgrounds.

"The idea was that we preferred to sample as many populations, and as assorted a set of populations, as probable," Ranciaro claimed. "We provided pastoralists, agro-pastoralists, agriculturalists and hunter-gatherers, so the 4 key subsistence designs were all lined."

The Penn researchers labored with African collaborators and local district offices and tribal chiefs to distribute the phrase and recruit volunteers for their review.

"This was a incredibly tough examination to do in the discipline in remote regions," claimed Ranciaro. "We have been thorough to make positive that folks comprehended why we were being performing this study and that they would want to commit to the hour or much more of time essential to do the examination."

The examination reveals irrespective of whether a person has the means to digest lactose into glucose and galactose. It needs individuals to speedy right away, have their blood sugar measured, then consume a sweet beverage made up of the equal lactose of one to two liters of cow's milk and subsequently have their blood sugar analyzed at established intervals.

To seem for genetic variants amid the populations' skills to digest milk, the group sequenced a few genomic areas thought to influence the action of the lactase-encoding LCT gene in 819 Africans from sixty three various populations and 154 non-Africans from 9 different populations in Europe, the Middle East and Central and East Asia. They also examined the final results of the lactose tolerance take a look at in 513 individuals from 50 populations in East Africa.

Their sequencing and phenotyping initiatives verified the affiliation among lactase persistence and a few acknowledged single-nucleotide polymorphisms, or SNPs, sites wherever the DNA sequence varies in just a person "letter." But they also identified two new SNPs connected with the trait positioned in areas that are imagined to control lactase gene expression.

Their assessment revealed solid evidence of new beneficial range impacting various variants affiliated with lactase persistence in African populations, possible in reaction to the cultural progress of pastoralism. The distinct geographic patterns in which these variants ended up present correlate in a lot of cases with historic human migrations, mixing between populations as perfectly as the distribute of cattle, camels or sheep.

For instance, they identified the variant linked with lactase persistence in Europeans, T-13910, in central and northern African pastoralist groups, suggesting that these teams may possibly have combined traditionally with a non-African inhabitants. The age of this genetic mutation is believed to be 5,000-twelve,300 yrs previous, coinciding with the origins of cattle domestication in North Africa and the Center East. And a variant, G-13915, found at significant frequencies in the Arabian Peninsula, and also present in northern Kenya and northern Sudan, dates to around five,000 decades ago, all over the time that archaeological proof suggests that camels were being domesticated in the area.

Yet another variant, G-13907, was recognized in the northern reaches of Sudan and Kenya as well as in Ethiopia. The scientists speculate that the mutation may perhaps have arisen in Cushitic populations in Ethiopia, who afterwards migrated into Kenya and Sudan in the last 5,000 a long time.

They observed even now an additional variant, C-14010, in Tanzania and Kenya as well as in southern Africa. This variant is believed to have arisen three,000 to seven,000 a long time back, a timing in line with the migration of pastoralists from North Africa into East Africa. The researchers' evaluation suggests that this variant unfold additional lately into southern African, potentially only in the final one,000 many years.

"We are starting off to paint a photo of convergent evolution," Tishkoff reported. "Our final results are showing unique mutations arising in unique destinations that are below choice and soaring to substantial frequencies and then reintroduced by migration to new locations and new populations."

Even with the new variants the Penn crew discovered, there had been continue to patterns that the genetic data could not explain. Some groups that appeared to be in a position to digest milk lacked any genetic signal of this skill. The Hadza, just about fifty percent of whom had the lactase persistence trait, are one particular instance.

"This raises the powerful risk that there are other variants out there, probably in locations of the genome we have not however examined," Tishkoff claimed.

A different possibility is that commensal micro organism in the intestine could offer humans a serving to hand in digesting milk. The crew is now assaying Africans' intestine germs to see if that could possibly be the scenario.

Added co-authors on the analyze included Michael C. Campbell, Jibril B. Hirbo and Wen-Ya Ko of Penn's Office of Genetics Alain Froment of the Mus

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Ish Geber
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I read a few studies where it said that ealry European farmer populations weren't ably to digests milk. They weren't lactose tolerant, is what these papers stated.


Thou, I curious to how they will tweak the back migration this time.

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the lioness,
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naturally, the earlier Europeans were hunter gatherers.

____________________________________


Emerging genetic patterns of the european neolithic: Perspectives from a late neolithic bell beaker burial site in Germany†

Esther J. Lee et al.

Abstract

The transition from hunting and gathering to agriculture in Europe is associated with demographic changes that may have shifted the human gene pool of the region as a result of an influx of Neolithic farmers from the Near East. However, the genetic composition of populations after the earliest Neolithic, when a diverse mosaic of societies that had been fully engaged in agriculture for some time appeared in central Europe, is poorly known. At this period during the Late Neolithic (ca. 2,800–2,000 BC), regionally distinctive burial patterns associated with two different cultural groups emerge, Bell Beaker and Corded Ware, and may reflect differences in how these societies were organized. Ancient DNA analyses of human remains from the Late Neolithic Bell Beaker site of Kromsdorf, Germany showed distinct mitochondrial haplotypes for six individuals, which were classified under the haplogroups I1, K1, T1, U2, U5, and W5, and two males were identified as belonging to the Y haplogroup R1b. In contrast to other Late Neolithic societies in Europe emphasizing maintenance of biological relatedness in mortuary contexts, the diversity of maternal haplotypes evident at Kromsdorf suggests that burial practices of Bell Beaker communities operated outside of social norms based on shared maternal lineages. Furthermore, our data, along with those from previous studies, indicate that modern U5-lineages may have received little, if any, contribution from the Mesolithic or Neolithic mitochondrial gene pool.

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Tukuler
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Where is the date for this OP article and the report it mentions? Was the article written in English? Please source.
EDIT: http://www.upenn.edu/pennnews/news/penn-team-links-africans-ability-digest-milk-spread-cattle-raising
The report itself is safe behind paywall http://www.cell.com/ajhg/abstract/S0002-9297 (14)00067-6
quote:


Africans' ability to digest milk linked to spread of cattle raising

[...]

For instance, they identified the variant linked with lactase persistence in Europeans, T-13910, in central and northern African pastoralist groups, suggesting that these teams may possibly have combined traditionally with a non-African inhabitants. The age of this genetic mutation is believed to be 5,000-twelve,300 yrs previous, coinciding with the origins of cattle domestication in North Africa and the Center East. And a variant, G-13915, found at significant frequencies in the Arabian Peninsula, and also present in northern Kenya and northern Sudan, dates to around five,000 decades ago, all over the time that archaeological proof suggests that camels were being domesticated in the area.

Yet another variant, G-13907, was recognized in the northern reaches of Sudan and Kenya as well as in Ethiopia. The scientists speculate that the mutation may perhaps have arisen in Cushitic populations in Ethiopia, who afterwards migrated into Kenya and Sudan in the last 5,000 a long time.

They observed even now an additional variant, C-14010, in Tanzania and Kenya as well as in southern Africa. This variant is believed to have arisen three,000 to seven,000 a long time back, a timing in line with the migration of pastoralists from North Africa into East Africa. The researchers' evaluation suggests that this variant unfold additional lately into southern African, potentially only in the final one,000 many years.

"We are starting off to paint a photo of convergent evolution," Tishkoff reported. "Our final results are showing unique mutations arising in unique destinations that are below choice and soaring to substantial frequencies and then reintroduced by migration to new locations and new populations."

.

Alleles associated with lactase persistance:
* C-3712
* G-13907
* T-13910
* C-13913
* G-13915
* C-14010
* A-22018.


LP age in Africa correlates well with cattle
domestication age but is not necessarily
aligned with pastoralism as the Hadza Click
speaking hunter gatherers have LP phenotype
as do the Sandawe not only the pastoralist
Beja, Masai, Tutsi, Hausa, and Fulani etc.

The TMRCA of T-13910 in Sudanese Fulani
* _LD method = 6,475 (95% CI 5,875-7,100)
* Rho method = 6,134 (±682) and 10,735 (±1,193)

Thus the age of Fulani LP predates all others
having it due to T-13910 which supposedly
originated with "European Caucasian".


The bulk of European/Caucasian scientists seek
to disguise this in terms of Fulani admixture
from Caucasians but since ancestral Fulani were
the first to have it, the fact is more like the
reverse. Caucasians who spread this factor in
EurAsia are admixed from ancestral Fulani.

Just to show how hard it is to junket Caucasian affiliation
for the Fulani, Enattah et al, after explaing the various age
calculation methods and their bearing make this statement
quote:
Interestingly, if we take into account the high prevalence of LP
and the LP T-13910 allele in the Fulani and northern Europeans,
as well as the almost-identical LP H98 allelic haplotype carrying
the T-13910 allele (not only in the 30-kb region studied here but
also in an 800-kb region in some populations [data not shown]),
similar age estimates emerge for the T-13910 allele in both
populations
. This would indicate that the African Fulani and
northern Europeans probably share the origin of this mutation
and
perhaps also share a dairy culture. Previous studies in Fulani have
also suggested a degree of Caucasian admixture in their gene pool,
a finding that supports the Caucasian origin of the LP H98 T-13910
allele. (28)

While still not ceding primacy to the Fulani but willing
to share it with them, they continue to see T-13910 LP
as Caucasian in origin because of a "suggested degree
of Caucasin admixture in [the Fulani] gene pool."

Perhaps this is why convergent evolution is
brought up in the OP article. But why was that
not thought of earlier? Gene flow is always the
answer when traits are shared by Africans and
Europeans. But when the characteristic is proven
older in Africa gene flow is dismissed in favor of
convergence to explain why Euros also have it.

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Amun-Ra The Ultimate
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Here's below a table about lactase persistence frequencies in various African and world populations I posted in the Green Sahara thread.

It's important to make the distinction between the phenotype (having Lactase Persistence (LP) in adulthood) and having the genotype for that trait, since all the responsible or associated genes(alleles) for LP have not been found yet. In fact, a great majority of them have not been found yet(at least at the moment of writing this, see new studies).

Individuals are classified into 3 types, those with lactase persistence (LP), lactase intermediate persistence (LIP) or lactase non-persistence (LNP).

So, imo, for a population to exhibit a high frequency of LP there must be 2 main prerequisites:

1) Practice of herding, in the past. So access to animal milk
2) A strong positive natural selection element.

A very high level of lactase persistance in a population can be explained by a strong bottleneck effect in the past of a herding population, which led to the selection of people with LP in a way that people without LP couldn't survive or reproduce much.

It's hard to imagine many situations where it would be the case. We're talking, imo, about major bottleneck events like drought, famine, diseases (due to lack of milk vitamins or, if the LP gene is also responsible for other phenotype trait(s), like protection against some infections diseases for example).

So ultimately populations with a history of herding have various level of LP depending on degree of adaptive advantage provided by the consumption of milk at a certain point in their past history.

The most common gene associated with LP in European population have been identified (T-13910 ). But there's still many people around the world who doesn't have that gene/allele and still possess the LP trait.

3 new genes associated with LP have been identified by Tishkoff and al in
Africa, that is, C-14010, G-13915 and G-13907. The C-14010 seems to be associated with Nilo-Saharan and Cushitic people. Still many people in Africa, and the rest of the world, don't possess any of the 4 known associated genes mentioned above (and a few one ones discovered in recent studies)

In Africa, populations like Wolof, Yoruba, Igbo(Ibo), Gabon (Bantu), Xhosa have the LP phenotype but not any of the known genes associated with it (genes associated with it in those populations will probably be found in future research).

On the table below, we can see for example the LP frequencies such as:

Gabon Bantu=40%
Nigeria Igbo=18%
Nigeria Yoruba=17%
Senegal Toucouleurs=90%
Senegal Wolof=51%
South Africa Sotho=35%
South Africa Xhosa=18%

The populations cited above have the LP phenotype but the genotype associated with it have not been found yet for the most part.

In the majority of the African populations the allele(s) associated or responsible for their LP is either unknown, C-14010 or one of the other 2 identified alleles associated with LP in Africa. New studies can provide updated information on the new genes responsible for the LP phenotype that have been discovered. One of the important point here is that there's many different alleles for LP in the world, some seems to be more prevalent (and probably originated) in Europe/Middle East, others in Africa, etc. The genes responsible for the LP phenotype has not been found yet for many populations in Africa.

Here's the table about lactase persistence frequencies, thus LP phenotype, in various African and world populations (a very nice compilation of past studies):


 -

From The Evolutionary Role of Human-Specific Genomic Events Yuval Itan (2009)

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Clyde Winters
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^^^Great Information

.

--------------------
C. A. Winters

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Ish Geber
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quote:
Originally posted by the lioness,:
naturally, the earlier Europeans were hunter gatherers.

____________________________________


Emerging genetic patterns of the european neolithic: Perspectives from a late neolithic bell beaker burial site in Germany†

Esther J. Lee et al.

Abstract

The transition from hunting and gathering to agriculture in Europe is associated with demographic changes that may have shifted the human gene pool of the region as a result of an influx of Neolithic farmers from the Near East. However, the genetic composition of populations after the earliest Neolithic, when a diverse mosaic of societies that had been fully engaged in agriculture for some time appeared in central Europe, is poorly known. At this period during the Late Neolithic (ca. 2,800–2,000 BC), regionally distinctive burial patterns associated with two different cultural groups emerge, Bell Beaker and Corded Ware, and may reflect differences in how these societies were organized. Ancient DNA analyses of human remains from the Late Neolithic Bell Beaker site of Kromsdorf, Germany showed distinct mitochondrial haplotypes for six individuals, which were classified under the haplogroups I1, K1, T1, U2, U5, and W5, and two males were identified as belonging to the Y haplogroup R1b. In contrast to other Late Neolithic societies in Europe emphasizing maintenance of biological relatedness in mortuary contexts, the diversity of maternal haplotypes evident at Kromsdorf suggests that burial practices of Bell Beaker communities operated outside of social norms based on shared maternal lineages. Furthermore, our data, along with those from previous studies, indicate that modern U5-lineages may have received little, if any, contribution from the Mesolithic or Neolithic mitochondrial gene pool.

Oddly, Natufians are associated with the spead of early farmers into Europe.


quote:

The surprise is that the Neolithic peoples of Europe and their Bronze Age successors are not closely related to the modern inhabitants, although the prehistoric/modern ties are somewhat more apparent in southern Europe. It is a further surprise that the Epipalaeolithic Natufian of Israel from whom the Neolithic realm was assumed to arise has a clear link to Sub-Saharan Africa...

--C Brace (2005)


quote:

E3b originated in East Africa and expanded into the Near East and northern Africa at the end of the Pleistocene (Underhill et al. 2001).

E3b lineages would have then been introduced from the Near East into southern Europe by farmers, during the Neolithic expansion (Hammer et al. 1998; Semino et al. 2000; Underhill et al. 2001).


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Ish Geber
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Tishkoff's team estimates that the most successful of the African lactose tolerance mutations arose within the last 7000 years and quickly spread through dairying populations.


quote:

Got lactase?


In the US and many other countries, we've certainly "got milk," but not everyone can enjoy it. For around 10% of Americans, 10% of Africa's Tutsi tribe, 50% of Spanish and French people, and 99% of Chinese, a tall cold glass of milk means an upset stomach and other unpleasant digestive side effects.

In fact, most adults in the world are lactose intolerant and cannot digest lactose, the primary sugar in milk.

And yet, regardless of our ancestry, most of us began our lives happily drinking milk from a bottle or breast — so what happened in the intervening time? Why do so many babies enjoy lactose and so many adults avoid it? Lactose is broken down by a protein called lactase, which acts as a pair of molecular scissors, snipping the lactose molecule in two. Anyone who drank milk as a baby carries a working version of the gene that codes for lactase. In lactose tolerant individuals, that gene keeps working into adulthood, producing the protein that digests lactose and makes eating ice cream a pleasant experience. But in people who are lactose intolerant, that lactase gene is switched off after weaning. Now, new research reveals that the Stone Age ancestors of European dairy-lovers probably couldn't digest milk either. So how did they get from bellyaches to milk mustaches? The answer is an evolutionary story that takes us from the milkmaids of the Alps to the Maasai herdsmen of Africa.


Where's the evolution?


Mutations that keep the lactase gene permanently switched on are common among modern Europeans — but not among their ancestors. In March 2007, a team of German and British researchers announced that they went looking for that mutation in the 7000-year-old fossils of ancient Europeans and came up empty-handed.

The researchers managed to extract the length of DNA corresponding to the lactose tolerance mutation from eight Neolithic human fossils and one Mesolithic fossil, but those DNA sequences did not carry the telltale mutation. The results suggest that as late as 5000 BC most ancient Europeans could not have digested milk as adults — and that they only later evolved into milk-drinking societies.



http://evolution.berkeley.edu/evolibrary/news/070401_lactose
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Amun-Ra The Ultimate
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This intro quoted below echo a bit what I said above about very strong positive selection events which affected populations with a very high level of LP (Lactase Persistence) in adulthood like Northwest Europeans, Northwest Niger-Congo speakers, etc.

So populations who have lactase persistence at a lower but substantial level may have a herding past but didn't went through such a strong positive selection events (drought, diseases, famine, lack of vitamins, etc). They went through a lower degree of positive selection for LP.

quote:
Continued ability to digest lactose after weaning provides a possible selective advantage to individuals who have access to milk as a food source. The lactase persistence (LP) phenotype exists at varying frequencies in different populations and SNPs that modulate the regulation of the LCT gene have been identified in many of these populations. Very strong positive selection for LP has been illustrated for a single SNP (rs4988235) in northwestern European populations, which has become a textbook example of the effect of recent selective sweeps on genetic variation and linkage disequilibrium.
- Intro from Stronger signal of recent selection for lactase persistence in Maasai than in Europeans
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Amun-Ra The Ultimate
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This study about European populations place the origin of the very strong positive selective events between 3000 BC to AD 1200 in European populations using aDNA. It's a bit surprising as you would think it would be closer to the beginning of the domestication of cattle (which otherwise can also be kept for their meat. Their blood can also be consumed). Of course many African populations have a completely different LP history since the gene responsible for their LP persistence is generally not the same as Europeans (except for some populations like to Fulani which have a high percentage of the European allele).

quote:
Conclusion

Lactase persistence is a genetic trait enabling life-long digestion of the milk sugar lactose. The ability to rely on ruminant secondary products, such as milk, likely conveyed selective advantage during times of resource scarcity, and genetic lactase persistence has independently evolved at least five times in European, Middle Eastern, and African populations . Previous ancient DNA studies have established that genetic lactase persistence was low or absent in most European Neolithic populations . In this study, we show that the frequency of lactase persistence in medieval Germany (72%) is similar to that found today in Germany and Austria (71–80%), suggesting that the incomplete selective sweep of the lactase persistence allele may have reached the present allele frequency in western Central Europe by AD 1200 . Although many aspects of the origin and early evolutionary history of the T-13910 LP allele remain uncertain, ancient DNA research has made great strides in narrowing the period of European LP selection to an approximately 4,000 year window spanning 3000 BC to AD 1200 . Future ancient studies on this period are likely to reveal the specific evolutionary forces acting on the T-13910 allele and the relationship between dairying and LP genotypes.

- From Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe
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Here's below an interesting graph of the Lactase Persistence frequency vs traits among southern African populations.

The lactase persistance in some populations can be explained partly by the European or Eastern African alleles. But a larger part of it can be explained by what I would call a Niger-Congo LP allele(s) (the white part). Referred as Iron-Age agro-pastoralists in the graph.

For example, South Western Bantu Speakers have none of the European or East African allele but still have lactase persistance. Same for the Manyanga people in Congo as well as many other populations in Africa not shown in the graph.


 -
From Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists

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Ish Geber
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As I have been saying for awhile now, from East to South, inhabitation.


quote:
Breton et al. analyze lactase persistence variants and genome-wide SNPs among southern African groups and show that Khoe pastoralists have partial East African ancestry. This finding suggests that an East African group migrated south, brought pastoralism to southern Africa, and admixed with local hunter-gatherers to form the ancestors of Khoe.


--Gwenna Breton et al.

Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists


Received: November 26, 2013; Received in revised form: December 20, 2013; Accepted: February 15, 2014; Published Online: April 03, 2014
Published: April 3, 2014
DOI: http://dx.doi.org/10.1016/j.cub.2014.02.041


http://www.cell.com/current-biology/fulltext/S0960-9822-14-00209-7

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Ish Geber
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More on Allele (T-13910).


quote:

Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe

Ruminant milk and dairy products are important food resources in many European, African, and Middle Eastern societies. These regions are also associated with derived genetic variants for lactase persistence. In mammals, lactase, the enzyme that hydrolyzes the milk sugar lactose, is normally down-regulated after weaning, but at least five human populations around the world have independently evolved mutations regulating the expression of the lactase-phlorizin-hydrolase gene. These mutations result in a dominant lactase persistence phenotype and continued lactase tolerance in adulthood. A single nucleotide polymorphism (SNP) at C/T-13910 is responsible for most lactase persistence in European populations, but when and where the T-13910 polymorphism originated and the evolutionary processes by which it rose to high frequency in Europe have been the subject of strong debate. A history of dairying is presumed to be a prerequisite, but archaeological evidence is lacking. In this study, DNA was extracted from the dentine of 36 individuals excavated at a medieval cemetery in Dalheim, Germany. Eighteen individuals were successfully genotyped for the C/T-13910 SNP by molecular cloning and sequencing, of which 13 (72%) exhibited a European lactase persistence genotype: 44% CT, 28% TT. Previous ancient DNA-based studies found that lactase persistence genotypes fall below detection levels in most regions of Neolithic Europe. Our research shows that by AD 1200, lactase persistence frequency had risen to over 70% in this community in western Central Europe. Given that lactase persistence genotype frequency in present-day Germany and Austria is estimated at 71–80%, our results suggest that genetic lactase persistence likely reached modern levels before the historic population declines associated with the Black Death, thus excluding plague-associated evolutionary forces in the rise of lactase persistence in this region. This new evidence sheds light on the dynamic evolutionary history of the European lactase persistence trait and its global cultural implications.

[...]

Two hypotheses have been proposed to explain the origin of LP and its association with dairying: the culture-historical hypothesis [25] and the reverse cause hypothesis [26]. The culture-historical hypothesis posits that the LP allele arose from low frequency through selection in cultures with a long history of dairying. By contrast, the reverse-cause hypothesis holds that the LP allele may have already been common in certain populations due to genetic drift and only these populations would have adopted the cultural practice of dairying. Additional genetic pressures may have existed in arid climates where milk is one of the only clean sources of water [27] or in northern latitudes where, in the absence of vitamin D, the presence of lactose facilitates the absorption of calcium by the intestinal mucosa and thus reduces the risk of rickets and osteomalacia [28]. Rickets and osteomalacia can cause deformation of the pelvis and are leading causes of obstructed labor and consequent maternal mortality and perinatal morbidity in traditional societies without access to modern medical care [29].

Keeping cattle, sheep and goats not only for meat but also for milk provided important advantages for ancient societies. Milk contains high quality fat, protein and sugar and high amounts of calcium [30]. It is a clean liquid that can be converted into a variety of storable products that may have helped prehistoric people survive periods of scarcity [17]. It has been estimated that a prehistoric cow was able to produce 400–600 kg of milk in a lactation period of three to four months. Even after subtracting the 250–350 kg needed for the raising of a calf, 150–250 kg of milk would remain available for human consumption. The caloric content of this milk is almost equivalent to the meat of an entire cow, and it can be exploited multiple times throughout the animal's lifetime [31].

Although archaeological evidence for dairying in prehistoric Europe is scarce, recent zooarchaeological and biomolecular data suggest that dairying was practiced from the very beginning of the Neolithic (ca. 5000 BC) and became more and more important over time [16], [23], [32]. Another line of evidence comes from SNP [13] and microsatellite variation [33] studies that report strong signals of recent positive selection at the C/T-13910 locus. These studies estimate that selective pressure on the allele began 2188–20650 years BP and 7450–12300 years BP, respectively, and computer simulations place the origin of the allele at 6256–8683 years BP in a region between the central Balkans and Central Europe [18].

Previous ancient DNA studies of LP have reported low, but highly variable frequencies for the lactase persistence allele in Neolithic Europe (Figure 1). In a Neolithic Basque population the lactase persistence allele was found in seven out of 26 individuals, of which two were heterozygous and five were homozygous for the LP allele [34]. In a separate study, one Neolithic individual from Sweden was also found to be heterozygous [35]. All other studies reported only homozygous lactase non-persistent genotypes [14], [36], [37]. To date, only one published ancient DNA study has investigated LP prevalence in a post-Neolithic population; in that study on medieval Hungary (ca. AD 900–1100), local commoners and foreign conquerors were found to have different LP genotype frequencies [38]. The foreign conquerors (originating from the east) were found to have exclusively lactase non-persistent genotypes, whereas the local commoners exhibited 33% LP genotypes (CT and TT). As modern LP genotype frequencies in the region are >60% today [38], these results imply rapid allele frequency change during the past millennium.

[...]

Introduction

Lactase persistence (LP) is a common genetic trait in many European, African and Middle Eastern populations. In Europe, LP primarily results from a C→T transition located approximately 14,000 bp upstream of the lactase-phlorizin-hydrolase (LCT) gene in intron 9 of the minichromosome maintenance 6 (MCM6) gene on chromosome 2 [1], [2]. A thymine at this locus (T-13910) prevents down-regulation of lactase activity after weaning. In addition to the European C/T-13910 LP SNP, this region also includes four other SNPs associated with LP in Arab (T/G-13915) and African (C/G-13907, T/C-13913, G/C-14010) populations [2]–[4].

[...]

Discussion

The European T-13910 LP allele is among the few human genetic variants with evidence of strong recent selection. Nevertheless, the origin and evolutionary history of this allele remains subject to great debate. Previous studies have established that the T-13910 LP allele was largely absent from early European Neolithic farmers, including LBK populations [14], but little work has been conducted on later periods. A study of medieval Hungary found moderate levels of LP in local commoners (33%) ca. AD 900–1100, but extrapolating from these results is complicated by the region's history of conquest by lactase non-persistent Asian invaders [38]. This study of the Dalheim cemetery is the first to investigate post-Neolithic LP frequency in western Central Europe, where LP frequencies are >70% today.

Recently, it has been speculated that the major population declines associated with the AD 1346–1352 Black Death epidemics may have impacted allele frequencies in Europe either through selection or drift. Although this discussion has primarily focused on the CCR5-Δ32 allele [40], [41], it raises the question of whether Black Death population losses, reportedly 30% of the entire European population [40], may have also played a role in altering the frequency of other alleles through drift due to population decline.

Both direct radiocarbon dating and historical records securely identify the Dalheim cemetery as a pre-Black Death cemetery, allowing pre-epidemic LP frequencies to be measured. The high frequency of C/T-13910 LP genotypes observed in the Dalheim cemetery (72%) falls within the range of LP frequencies reported for present-day Germany and Austria (71–80%) and the alleles are in Hardy-Weinberg equilibrium, suggesting allele frequency stability over the last millennium. Thus, there is no evidence of C/T-13910 LP frequency change associated with the Black Death. Additionally, our results suggest that the incomplete selective sweep posited for the T-13910 allele [24] may have reached the present allele frequency in western Central Europe by ca. AD 1200.

Conclusion

Lactase persistence is a genetic trait enabling life-long digestion of the milk sugar lactose. The ability to rely on ruminant secondary products, such as milk, likely conveyed selective advantage during times of resource scarcity, and genetic lactase persistence has independently evolved at least five times in European, Middle Eastern, and African populations. Previous ancient DNA studies have established that genetic lactase persistence was low or absent in most European Neolithic populations. In this study, we show that the frequency of lactase persistence in medieval Germany (72%) is similar to that found today in Germany and Austria (71–80%), suggesting that the incomplete selective sweep of the lactase persistence allele may have reached the present allele frequency in western Central Europe by AD 1200. Although many aspects of the origin and early evolutionary history of the T-13910 LP allele remain uncertain, ancient DNA research has made great strides in narrowing the period of European LP selection to an approximately 4,000 year window spanning 3000 BC to AD 1200. Future ancient studies on this period are likely to reveal the specific evolutionary forces acting on the T-13910 allele and the relationship between dairying and LP genotypes.

--Annina Krüttli

Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe

Published: January 23, 2014DOI: 10.1371/journal.pone.0086251


http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086251

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Tukuler
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quote:
Originally posted by Amun-Ra The Ultimate:

Of course many African populations have a completely different LP history since the gene responsible for their LP persistence is generally not the same as Europeans (except for some populations like to Fulani which have a high percentage of the European allele).

.

For the life of me I can't
understand how T13910 which
is oldest in Fulani than in any
other people in the world is
"the European allele."


The TMRCA of T-13910 in Sudanese Fulani
* _LD method = 6,475 (95% CI 5,875-7,100)
* Rho method = 6,134 (±682) and 10,735 (±1,193)

  • Map from Lokki (2011) Lactase persistence genotypes
    and malaria susceptibility in Fulani of Mali.

    Malar J. 2011 Jan 14;10(1):9. [Epub ahead of print]
     -
    Figure 1. - African SNPs in the enhancer region of the LCT gene, in intron 13 of
    the MCM6 gene
    [3, 8-9, 16, 37]. Red colour points to the region of origin of samples
    in Mali (in black). Arrows represent suggested patterns of spread of the mutations.
    Without haplotype analyses between different populations, distinguishing original
    mutations from those that have spread between populations is not possible. Double
    arrow represents the fact that the original location of T/G-13915 cannot be determined,
    although it has been found in Arabic populations as well as in the Fulani of Mali (this
    study).

What I mean is if not convergence
but gene flow is discussed then no
doubt the flow goes from older to
younger.

If convergence then it can't even
be said the gene is Euro specific
since it can and did pop up elsewhere.
See Enattah (2007).

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Ponsford
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Lactose Tolerance is one sign that show we are still evolving.Ancient humans gene that regulated their ability to digest lactose shut down soon after being weaned of their mother's milk,but when we started to domesticate cows etc being able to digest milk became nutritionally advantageous.People with this genetic mutation were able to propogate their genes.
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xyyman
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Some of you may remember a paper, IIRC it was Perieria et al- Saami Berber connection ?, anyways , Fulani shared a unique haplotype within mtDNA hg-U found in Northern Europeans.
Europeans are a sub-set of Africans


quote:

Interestingly, if we take into account the high prevalence of LP
and the LP T-13910 allele in the Fulani and northern Europeans,
as well as the almost-identical LP H98 allelic haplotype carrying
the T-13910 allele (not only in the 30-kb region studied here but
also in an 800-kb region in some populations [data not shown]),
similar age estimates emerge for the T-13910 allele in both
populations. This would indicate that the African Fulani and
northern Europeans probably share the origin of this mutation and
perhaps also share a dairy culture. Previous studies in Fulani have
also suggested a degree of Caucasian admixture in their gene pool,
a finding that supports the Caucasian origin of the LP H98 T-13910
allele. (28)


But these variants didn’t completely account for the reason why some Africans were able to digest milk,” Ranciaro said.
.
Their sequencing and phenotyping efforts confirmed the association between lactase persistence and three known single–nucleotide polymorphisms, or SNPs, places where the DNA sequence varies in just one “letter.” But they also identified two new SNPs associated with the trait located in regions that are thought to regulate lactase gene expression.

For example, they found the variant associated with lactase persistence in Europeans, T-13910, in central and northern African pastoralist groups, suggesting that these groups may have mixed historically with a non-African population. The age of this genetic mutation is estimated to be 5,000-12,300 years old, coinciding with the origins of cattle domestication in North Africa and the Middle East..
Another variant, G-13907, was identified in the northern reaches of Sudan and Kenya as well as in Ethiopia. The researchers speculate that the mutation may have arisen in Cushitic populations in Ethiopia, who later migrated into Kenya and Sudan in the last 5,000 years.
They observed still another variant, C-14010, in Tanzania and Kenya as well as in southern Africa. This variant is believed to have arisen 3,000 to 7,000 years ago, a timing in line with the migration of pastoralists from North Africa into East Africa. The researchers’ analysis suggests that this variant spread more recently into southern African, perhaps only in the last 1,000 years.
“We’re starting to paint a picture of convergent evolution,” Tishkoff said. “Our results are showing different mutations arising in different places that are under selection and rising to high frequencies and then reintroduced by migration to new areas and new populations.”
Even with the new variants the Penn team identified, there were still patterns that the genetic data couldn’t explain. Some groups that appeared to be able to digest milk lacked any genetic sign of this ability. The Hadza, nearly half of whom had the lactase persistence trait, are one example.
“This raises the strong possibility that there are other variants out there, perhaps in regions of the genome we haven’t yet examined,” Tishkoff said.
.
Additional co-authors on the study included Michael C. Campbell, Jibril B. Hirbo and Wen-Ya Ko of Penn’s Department of Genetics; Alain Froment of the Musée de l’Homme in Paris; Paolo Anagnostou of Universita’ La Sapienza and Istituto Italiano di

--------------------
Without data you are just another person with an opinion - Deming

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the lioness,
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AJHG doi:10.1016/j.ajhg.2014.02.009

Genetic Origins of Lactase Persistence and the Spread of Pastoralism in Africa

Alessia Ranciaro et al.

In humans, the ability to digest lactose, the sugar in milk, declines after weaning because of decreasing levels of the enzyme lactase-phlorizin hydrolase, encoded by LCT. However, some individuals maintain high enzyme amounts and are able to digest lactose into adulthood (i.e., they have the lactase-persistence [LP] trait). It is thought that selection has played a major role in maintaining this genetically determined phenotypic trait in different human populations that practice pastoralism. To identify variants associated with the LP trait and to study its evolutionary history in Africa, we sequenced MCM6 introns 9 and 13 and ∼2 kb of the LCT promoter region in 819 individuals from 63 African populations and in 154 non-Africans from nine populations. We also genotyped four microsatellites in an ∼198 kb region in a subset of 252 individuals to reconstruct the origin and spread of LP-associated variants in Africa. Additionally, we examined the association between LP and genetic variability at candidate regulatory regions in 513 individuals from eastern Africa. Our analyses confirmed the association between the LP trait and three common variants in intron 13 (C-14010, G-13907, and G-13915). Furthermore, we identified two additional LP-associated SNPs in intron 13 and the promoter region (G-12962 and T-956, respectively). Using neutrality tests based on the allele frequency spectrum and long-range linkage disequilibrium, we detected strong signatures of recent positive selection in eastern African populations and the Fulani from central Africa. In addition, haplotype analysis supported an eastern African origin of the C-14010 LP-associated mutation in southern Africa.

 -


________________________________________

for what they were blog

http://forwhattheywereweare.blogspot.com/2014/03/lactase-persistence-genetics-in-africa.html


Still plenty of room for further research

There are still way too many pockets of lactase persistence phenotype which remain unexplained and more rarely (Afghan Tajiks particularly) also pockets of lactose intolerance lacking explanation, as I discussed in 2010. Map of worldwide actual LP phenotype from Yuval Itan 2010:

http://www.biomedcentral.com/content/pdf/1471-2148-10-36.pdf
 -
Feb 9, 2010 ... A worldwide correlation of lactase persistence phenotype and genotypes. Yuval Itan1,2*, Bryony L Jones1, Catherine JE Ingram1, Dallas M .

To the surprise of the authors the Hadza hunter-gatherers have high frequencies (47%) of the lactase persistence phenotype (not associated to any of the previously mentioned alleles), something they try to explain on the grounds that the same enzymes that allow lactose digestion, also works as the enzyme phlorizin-hydrolase, which uses the substance phlorizin, found in many Rosaceae (the main group of fruit-producing plants). Besides its anti-diabetic properties, phlorizin has also been used to fight against malaria, what may well be another pathway of positive selection, alternative to usefulness of lactose digestion.

This is a particularly interesting note because it could potentially feed also alternative explanations for the strong selection of lactase persistence alleles in other populations, particularly Europeans. Just tentatively, it might have helped to fend off diabetes (type II) in high carbohydrate diets typical of the Neolithic onwards. The fact that people of West Eurasian and African ancestry are somewhat less prone to this type of diabetes than people of other Asian and Native American ancestry may support this function of lactase persistence.

However in the case of the Hadza a role against malaria (same enzyme) seems more likely.


In the case of Africa the Western Sahel pocket is most intriguing. Also the alleged 88% LP phenotype in the Sudanese (not apparent in the map but data from the same study - maybe they meant Western Sudanese from the Sudan region, i.e. the Sahel and not the Republic of Sudan?), which is only explained in half. Even Germans and Italians have much greater ability to digest milk than what their known alleles can explain so far.


______________________________________


http://www.ucl.ac.uk/news/news-articles/1003/10031601


Milk drinking: in our genes?
16 March 2010

A new study led by UCL scientists has found that current genetic data cannot explain why vast swathes of the world can digest milk.



The ability to digest the milk sugar lactose – also known as lactase persistence – is a selectively advantageous and recent evolutionary genetic trait, which emerged about 7,500 years ago in Europe and probably later in other parts of the world. This means that, once weaned, people in most parts of the world (large parts of Africa, most of Asia, and Oceania) cannot digest milk for the rest of their life.

However, the study published in BMC Evolutionary Biology,

A worldwide correlation of lactase persistence phenotype and genotypes
Yuval Itan

..shows that the four genetic mutations currently associated with the ability to digest milk cannot explain why many people in western and southern Africa, south eastern Europe, the Middle East, and southern and central Asia are able to digest milk. It also suggests that other genetic variants leading to the ability to digest milk exist, but have not yet been discovered.

Study co-author Dr Yuval Itan (UCL Genetics, Evolution and Environment) explains more fully what this study reveals.

Can you explain ‘lactase persistence’ in lay terms?
Lactase is the enzyme that breaks the lactose into two units that are digestible. It is produced by a gene and is active in human (and most mammalian) infants. Most human (and mammalian) adults cannot digest the sugar milk lactose after weaning. The minority of the human world population, mostly those from pastoralist background, is lactase persistent.

Lactase persistence is an evolutionary new trait, as shown by a collaborative study demonstrating that lactase persistence was absent in ancient Neolithic bones in Europe. A recent UCL study ‘The origins of lactase persistence in Europe’ showed that lactase persistence and dairying gene-culture co-evolution was likely to have originated in Europe about 7,500 years ago, in Central Europe/Northern Balkans, in the Linearbandkeramik culture.

However, the trait was likely to have evolved independently in Africa and in the Middle East since in these regions there are different associated genetic variants. Lactase persistence has a very high selective advantage, probably because of the various nutritional benefits that it gave during the harsh Neolithic times.

What were the aims of this study and how does it support previous studies undertaken in recent years?
Human lactase persistence has been thoroughly investigated in recent decades. Recent advances in genetics allowed specific genetic mutations to be associated with the lactase persistence trait.

However, we noticed that for some populations genetic data is insufficient to explain lactase persistence, mostly due to under prediction of the trait. For example, the Wolof ethnic group in Senegal have 51% frequency of lactase persistence, but when predicting their lactase persistence by their lactase persistence associated genetic data, it would appear that their lactase persistence is 0%. This suggested that there are more genetic variants associated with the ability to digest milk sugar that are waiting to be discovered.

The main objectives of this study were to investigate the correlation between the lactase persistence trait and its genotypes (the various mutations that explain the trait) worldwide in order to identify regions where lactase persistence genetic data is currently insufficient to explain lactase persistence, and in that way to suggest regions where genetic studies on local populations are likely to reveal new lactase persistence associated genetic variants.

We used and extended the database of lactase persistence that was first described in the UCL study ‘Lactose digestion and the evolutionary genetics of lactase persistence’ and extended the novel statistical correlation methodology that was developed for another UCL study to check in which geographic regions the lactase persistence phenotype can be explained by the lactase persistence genotypes. We have presented the GLAD (Global Lactase Persistence Association Database), as well as visually depicting in maps the Old World distribution of lactase persistence phenotype, genotypes and the correlation between the two.

What was the most surprising aspect of the research?
The vast extent of the regions where genetic data cannot explain lactase persistence was surprising. A good example is West Africa where genetic and phenotypic data of lactase persistence is available and there is a lack of correlation between the two. This is also very exciting, because performing further genetic studies in this region is likely to reveal new lactase persistence genetic variants that are yet unknown.

What does this study tell us about lactase persistence in global terms?


This study shows the frequency of lactase persistence across hundreds of
different populations around the world, and it can be clearly seen in the map (Figure 1 below right). It also tells us to exercise caution when attempting to use genetic data only for predicting lactase persistence in individuals across the world – as we have shown, it will be a long time before genetics can fully replace physiological tests of lactase persistence (such as breath hydrogen or blood glucose), because in various populations the genetic variants associated with lactase persistence have not yet been characterised.

How do your findings relate to the notion that milk drinking is healthy?
In my personal opinion, it seems that milk drinking is shown in the media as the healthy state of adults and children, while the fact is that the majority of humans are healthy individuals who cannot digest milk, and this shouldn’t be conceived as a problem.

Milk-related or processed milk products (such as yogurt and cheese) usually have a lower proportion of lactase than raw milk, so in some cases, individuals that are non-lactase persistent could digest them, and a clinician or a nutrition expert could give a good individually tailored advice on this matter.

Based on the conclusions of this study I would recommend that individuals who want to test if they are lactase persistent should take the traditional physiological tests rather than the genetic test, because it is currently not sufficient for many populations.

UCL context
UCL Genetics, Evolution and Environment was formed during the recent reorganisation of the Faculty of Life Sciences by bringing together scientists with shared interests in genetics, environmental and evolutionary biology who had previously been scattered among a variety of distinct departments.

It traces its origins to the now extinct Department of Comparative Anatomy, founded in 1826 and the first in Britain to offer a Zoology degree. It also incorporates the Galton Laboratory, the first institution in the world to study human genetics as a science. The department was the first in a UK university to introduce a BSc in Human Genetics and continues to offer innovative courses.

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xyyman
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This picture tells the proverbial "thousand words". It is clear that the Older populations can NOT digest milk. That includes The San/South Africans, Nilo-Sahrans, East Asians and Australians. Tropical Africans, Europeans and Harrapans, and Some Arabians can digest milk. The Gographic patterns suggest "Basal Eurasian" gene flow. May be not? I am reaching here....

quote:
Originally posted by the lioness,:
http://www.biomedcentral.com/content/pdf/1471-2148-10-36.pdf
 -


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Amun-Ra The Ultimate
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It's also interesting to put what I called above the Niger-Congo LP allele(s), not determined yet, in perspective of the origin of West African people(and thus Bantu people), as Niger-Congo speakers, in the Green Sahara before its dessication.

The following quotes are from the book: The Oxford Handbook of African Archaeology edited by Peter Mitchell, Paul Lane (2013)

Basically, it tells us people now living in West Africa (Akan, Igbo, Yoruba, etc) come from the Sahara during its desertification. (and before this they were migrants from eastern Africa considering the origin of Y-DNA haplogroups E-P2 and the linguistic origin of Niger-Congo(-Kordofanian) languages).

 -

quote:
In West Africa, there is very little evidence for people south of the Sahara prior to the mid-Holocene, and such evidence as does exist is primarily of small scattered groups of mobile hunter-gatherers, some of whom returned frequently, possibly even seasonally, to the same places.
quote:
Davies(1967) and Shaw (1978) both argued that before the desiccation of the Sahara, not only were Saharan inhabitants not compelled to move southward, but it was virtually impossible for them to do so. Postulated barriers to human occupation in southern West Africa include the difficulty of making a living in the dense rainforest prior to the advent of iron tools, and potentially lethal diseases such as malaria, onchocerciasis, and trypanosomiasis, the latter an added problem to herders because it can be devastating to cattle (Smith 1992). Only when climate zones contracted could people, and especially herders, move south.
quote:
The artefacts found at many early sites support a northern origin for SMA people in southern West Africa. Projectile points are often in a 'Saharan Style' with concave or convex bases, and pottery often bears comb and roulette impressions very similar to types known from the Sahara and the Nile Valley as early as the tenth millennium B.P.
It's written black on white. People in southern West Africa (Yoruba, Igbo, African-Americans, etc) have a northern origin. A green Saharan origins. They brought with them archaeological artefacts from the Green Sahara period including pottery and else.

 -

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the lioness,
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quote:
Originally posted by Amun-Ra The Ultimate:
They brought with them archaeological artefacts from the Green Sahara period including pottery and else.


pottery from where specifically?
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Amun-Ra The Ultimate
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^^^What do you mean? We're talking about pottery style prevalent across the Sahara, not just one specific place. It's from the common Green Sahara culture I often talk about on this site.

quote:
The artefacts found at many early sites support a northern origin for SMA people in southern West Africa. Projectile points are often in a 'Saharan Style' with concave or convex bases, and pottery often bears comb and roulette impressions very similar to types known from the Sahara and the Nile Valley as early as the tenth millennium B.P.

Thus, from the Atlantic coast to the Nile Valley.
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Tukuler
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Tishkoff she's got Fulani Madness. Clyde made
her publicly recant any notion of non-Africa
Fulani origin. Yet Ranciaro persists with Fulani
exotica (Hirbo co-signs), and that exotica as what
is essential to being Fulani. How can they posit
Roman era intro of T-13910 into Fulani whilst we
rapture over Green Sahara pastoralist rock art?
Not the first time a geneticist has so blundered
by basing themselves on old school ethnography.
In this case it was the proposition that Fulani
were "fathered by a lost Roman Legion."


  • ABSTRACT

    Using neutrality tests based on the allele frequency spectrum and long-range linkage disequilibrium, we detected strong signatures of
    recent positive selection in eastern African populations and the Fulani from central Africa.


    RESULTS
    Patterns of Nucleotide Diversity and Geographic
    Distribution of LP-Associated Variants


    Although the T-13910 variant was absent across most of
    Africa, we detected this polymorphism in the Mozabite
    from Algeria (northern Africa) at a frequency of 27.3%
    and in a few central African populations, namely the
    Arabic Baggara and Fulani from Cameroon (8% and
    22.9% frequency, respectively) and the Bulala from Chad
    (2.2% frequency) (Tables S1 and S8; Figures 2 and 3). The
    highest frequency of the T-13910 variant outside of Africa
    was found in northern Europeans (66.7%), ... some African
    populations with the T-13910 and A-22018 variants, such
    as the Bulala from Chad and the Fulani from Cameroon,
    shared the same haplotype background with Europeans.

    Signatures of Recent Selection
    We also demonstrated evidence of significant EHH (extending
    ~1.5 Mb) on chromosomes carrying the T-13910
    allele in the Fulani pastoralists from Cameroon (Figure 5).
    Given that microsatellite and SNP analysis suggested that
    this variant is on a haplotype background similar to that
    for Europeans, it was most likely introduced into the Fulani
    population by migration and admixture with a non-
    African source population. However, we cannot distinguish
    whether the extensive EHH observed in the Fulani
    was due to strong selection after the mutation was introduced
    into that population and/or whether a recent selective
    sweep occurred in a non-African population that then
    admixed with the Fulani.


    DISCUSSION
    Origins of the T-13910 Variant in Northern and
    Central African Populations


    Age estimates for the T-13910 variant range from 5,000
    to 12,300 years ago14,18,19,21,22 and coincide with the origins
    of cattle domestication in northern Africa and the
    Levant ~10,000 years ago.65 Although the T-13910 variant
    is present in central and northern African pastoralist
    populations, such as the Fulani and Arabic Baggara from
    Cameroon and the Mozabite from Algeria, it was
    not observed in other sub-Saharan African populations.
    11,14,18,19,21 This distribution of the T-13910 allele
    in Africa and the shared haplotype background of chromosomes
    containing this variant in Africans and non-Africans
    suggest that the T-13910 variant was introduced through
    gene flow from outside of Africa into northern and/or
    central Africa.21,29,66 In fact, the T-13910 variant in the
    Mozabite from Algeria occurred on the same haplotype
    background as observed in Middle Eastern populations,
    whereas the Fulani from Cameroon and the Bulala from
    Chad shared the same haplotype background with Europeans.
    The Fulani also shared a distinct T-13910 haplotype
    background with the Arabic Baggara. These patterns suggest
    that the distribution of observed haplotype variation
    might be due to gene flow that occurred over time from
    outside and within Africa possibly during key historical
    events, such as the settlement of the Roman Empire in
    parts of northern Africa
    and the expansion of the Arabs
    prior to and during the Ottoman empire within the last
    2,000 years.67 These inferred migration events are also
    consistent with studies based on mtDNA, Y chromosome,
    and autosomal genetic variation.11,29,68–73

Incredibly, this Ronciaro-Tishkoff lead team
refused Lokki (2011) into their reseach base
and considered age estimates from older
sources rather than Enattah's (2007) Rho figures.

 -

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quote:
Originally posted by Amun-Ra The Ultimate:
^^^What do you mean? We're talking about pottery style prevalent across the Sahara, not just one specific place. It's from the common Green Sahara culture I often talk about on this site.

quote:
The artefacts found at many early sites support a northern origin for SMA people in southern West Africa. Projectile points are often in a 'Saharan Style' with concave or convex bases, and pottery often bears comb and roulette impressions very similar to types known from the Sahara and the Nile Valley as early as the tenth millennium B.P.

Thus, from the Atlantic coast to the Nile Valley.
You are describing different green period populations below


quote:
Originally posted by Amun-Ra The Ultimate:


It explains that in very ancient time North Africa (including the coastal area) used to be inhabited by black Africans. That the modern populations now living there are not the same as the ancient. Although, it must be said, in Northwestern Africa, Iberian immigrants migrated there since a very long time ago (not later than 10000BC), replacing the previous Aterians(black Africans) inhabitants. (For those curious: then they went through admixtures with East African migrants and then went through bottleneck/founder effect(s), then went through admixtures with European/West Asian migrants and conquerors).

Aterian

Iberomaurusian

Capsian

_________________________


Environmental factors in human evolution and dispersals in the Upper Pleistocene of the western Mediterranean

Three of the known major cultural sub-divisions in Morocco: Middle Palaeolithic (Mousterian); Aterian; and Upper Palaeolithic (Iberomaurusian) appear to correlate with distinctive human groups. Middle Palaeolithic levels have been linked to archaic Homo sapiens and the Iberomaurusian to modern Homo sapiens. However the type of human fossils associated with the Aterian remains enigmatic. The ages of these industries, the transitions and the environmental background to such changes are also unclear.

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quote:
Originally posted by Tukuler:
Tishkoff she's got Fulani Madness. Clyde made
her publicly recant any notion of non-Africa
Fulani origin. Yet Ranciaro persists with Fulani
exotica (Hirbo co-signs), and that exotica as what
is essential to being Fulani. How can they posit
Roman era intro of T-13910 into Fulani whilst we
rapture over Green Sahara pastoralist rock art?
Not the first time a geneticist has so blundered
by basing themselves on old school ethnography.
In this case it was the proposition that Fulani
were "fathered by a lost Roman Legion."

As most of your posts this is scientifically retarded. It seems you don't know anything about genetics, even the basics, then proceed to run your mouth on this website about it, insulting proper biologists in this post I'm replying to. Not knowing something is ok, but then running your mouth about something you don't know, claiming other people are wrong, is ridiculous.

Even if there was indeed pastoralists in the Green Sahara in early times, it clearly doesn't mean the gene for lactase persistance appeared right at that time. The various genes for the LP traits (at least those known) first appeared at a much later dates than the domestication of cattle.

The earliest date for the domestication of cattle and the date for the appearance of the LP genes (if ever) are not related.

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Yes these, and what they reveal, are clearly
retarded in ARtUland where favored geneticists
are infallible Gods above independent analysis
and critique (except by ARtU of course). ARtU
co-signs to the Hamitic Hypothesis and its
correlary Caucasian North and East Africa
to explain any and all sharings between
Africans and so-called 'Eurasians.'


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Until someone satisfactorily demonstrates that the
haplotype Fulani T-13910 is associated with, isn't
Eurasian, the discussion will remain stagnant at best.
I personally don't see how the age estimates in table
6 favor an ancestral Fulani origin of the mutation
over some of the other groups. Not that age would
matter; the question is, is H98 Eurasian or not.

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quote:
Originally posted by Tukuler:
Yes these, and what they reveal, are clearly
retarded in ARtUland where favored geneticists
are infallible Gods above independent analysis
and critique (except by ARtU of course). ARtU
co-signs to the Hamitic Hypothesis and its
correlary Caucasian North and East Africa
to explain any and all sharings between
Africans and so-called 'Eurasians.'

Don't be ridiculous. The back migration of Eurasian people in Eastern Africa dates from 3000 years ago and later with Semitic speakers (which AEians are not). Ancient Egypt has its roots in the African Green Sahara culture as well as the following Tasian, Badarian and Naqada cultures which are all much earlier than this date.
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Tukuler
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Oh but what about
U6
M1
etc
so-called back migration and their dates?

Anyway you just upheld Hamitic Hypothesis
generated nonsense about Fulani LP and
denied there was a Green Sahara.

Talk about ridiculous.

--------------------
I'm just another point of view. What's yours? Unpublished work © 2004 - 2023 YYT al~Takruri
Authentic Africana over race-serving ethnocentricisms, Afro, Euro, or whatever.

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quote:
Originally posted by Amun-Ra The Ultimate:
The back migration of Eurasian people in Eastern Africa dates from 3000BC and later with Semitic speakers (which AEians are not).

Only a pinhead would speak of OOA branches of
Semitic as even residing near Ethiopia around 3000BC,
let alone entering the African Red Sea coast.

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quote:
Originally posted by Tukuler:
Oh but what about
U6
M1
etc
so-called back migration and their dates?

Anyway you just upheld Hamitic Hypothesis
generated nonsense about Fulani LP and
denied there was a Green Sahara.

Talk about ridiculous.

I don't know what you fail to say here but it sounds retarded. You're just jumping from one subjects to another like a headless chicken.

Get that into your thick head: the dates for domestication of cattle and the date for the appearance of the LP genes, if ever, are not related. This is basic, but in your post above you don't seem to understand that and pontificate biologists about it when it's only basic non subjective scientific knowledge.

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As long as I sound retarded to you
then I must be on the right track.

Meanwhile by Rho dating Fulani T-13910
remains the oldest so if flow instead
of convergence is at play everybody
else got T-13910 from the Fulani.

Roman infusion my redblack Pulo ass.

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quote:
Originally posted by Swenet:
quote:
Originally posted by Amun-Ra The Ultimate:
The back migration of Eurasian people in Eastern Africa dates from 3000BC and later with Semitic speakers (which AEians are not).

Only a pinhead would speak of OOA branches of
Semitic as even residing near Ethiopia around 3000BC,
let alone entering the African Red Sea coast.

Ok, I made an error and corrected it. I meant 3000 years ago of course and you know it. Since this is what we were talking about in the other thread.


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You say you've made an error as if it's an exception
and as if your posts are not typically smacking with
errors, lies and distortions. Case in point:

quote:
Originally posted by Amun-Ra The Ultimate:
the dates for domestication of cattle and the date for the appearance of the LP genes, if ever, are not related.

Let's see some evidence for this, right now. No
stalling, no excuses, no monologue, no emotional
appeals. Let's see some textual support.

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the lioness,
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[QUOTE]Originally posted by the lioness,:
[QB] http://www.biomedcentral.com/content/pdf/1471-2148-14-109.pdf

BMC Evolutionary Biology 2014, 14:109 doi:10.1186/1471-2148-14-109

The history of the North African mitochondrial DNA haplogroup U6 gene flow into the African, Eurasian and American continents

Bernard Secher et al.

Abstract (provisional)

Background

Complete mitochondrial DNA (mtDNA) genome analyses have greatly improved the phylogeny and phylogeography of human mtDNA. Human mitochondrial DNA haplogroup U6 has been considered as a molecular signal of a Paleolithic return to North Africa of modern humans from southwestern Asia.

Results

Using 230 complete sequences we have refined the U6 phylogeny, and improved the phylogeographic information by the analysis of 761 partial sequences. This approach provides chronological limits for its arrival to Africa, followed by its spreads there according to climatic fluctuations, and its secondary prehistoric and historic migrations out of Africa colonizing Europe, the Canary Islands and the American Continent.

Conclusions

The U6 expansions and contractions inside Africa faithfully reflect the climatic fluctuations that occurred in this Continent affecting also the Canary Islands. Mediterranean contacts drove these lineages to Europe, at least since the Neolithic. In turn, the European colonization brought different U6 lineages throughout the American Continent leaving the specific sign of the colonizers origin.


 -
 -

________________________________

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2987384/

Linking the sub-Saharan and West Eurasian gene pools: maternal and paternal heritage of the Tuareg nomads from the African Sahel 2010

Luísa Pereira,1,2 Viktor Černý,3,*


The influence of East Africa in the Tuareg can be investigated more directly through haplogroup M1.16 As concerns the finer classification of Tuareg M1 haplotypes, two of them (5 sequences out of 12) belong to M1b, which has a clear Mediterranean distribution, pointing to North Africa as its most probable gateway to the Tuareg. This finding is inconsistent with the absence of U6, which is believed to have entered Africa together with M1 in a back migration from western Eurasia around 45000 years ago. The time estimate for M1b, based on the coding region, is 23400±5600 years,16 placing its origin in the Early Upper Palaeolithic. More promising in ascertaining Eastern African origin is another haplotype observed in seven Tuareg individuals from Burkina Faso belonging to haplogroup M1a, which, though being considered dominant in East Africa42 also spread to the Mediterranean, and which has a total age of 28800±4900 years.

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quote:
Originally posted by Swenet:
You say you've made an error as if it's an exception
and your posts are not typically smacking with errors,
lies and distortions.

You're an idiot because you know very well that I meant 3000 years ago since I discussed this with you in the other thread and made many posts about it. You're dishonest and stupid.
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quote:
Originally posted by Tukuler:
As long as I sound retarded to you
then I must be on the right track.

Meanwhile by Rho dating Fulani T-13910
remains the oldest so if flow instead
of convergence is at play everybody
else got T-13910 from the Fulani.

Roman infusion my redblack Pulo ass.

Do you understand or not that the dates for domestication of cattle and the date for the appearance of the LP genes, if ever, are not related? Some populations, and obviously people (individuals) within a population, can have domesticated cattles and not carry the LP traits.
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It's a fact; errors are pandemic in your posts. Case
in point:

quote:
Originally posted by Amun-Ra The Ultimate:
the dates for domestication of cattle and the date for the appearance of the LP genes, if ever, are not related.


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quote:
Originally posted by Swenet:
It's a fact; errors are pandemic in your posts. Case
in point:

quote:
Originally posted by Amun-Ra The Ultimate:
the dates for domestication of cattle and the date for the appearance of the LP genes, if ever, are not related.


Yes some populations or individuals within a population can have domesticated cattles for a long time in their history (including family history) and still not carry the LP traits.
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First of all, how would that make the two "unrelated".
They are clearly related given the sheer amount of
LP linked alleles across various unrelated pastoralist
populations. Secondly, LP in the Sahara is
implicated by what you were told concerning
N.African pastoralists' ability to consume milk
per the rock art record, amongst other things.
Because you're such an ignorant, pinhead, however,
these basic common sense understandings, which go
without saying to anyone who has studied ancient
African history, don't register with you as
obvious. But since you're so illiterate in this
area, these basic ideas come across as controversial
or something to be argued over, re: your bewildered
"counter arguments" about the N.Africans being
referred to here "possibly" not having LP, because
LP and pastoralism "are not related".

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the lioness,
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name calling and competativness
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Lioness? You seem able to think outside the box.

quote:
Originally posted by Swenet:
Until someone satisfactorily demonstrates that the
haplotype Fulani T-13910 is associated with, isn't
Eurasian, the discussion will remain stagnant at best.
I personally don't see how the age estimates in table
6 favor an ancestral Fulani origin of the mutation
over some of the other groups. Not that age would
matter; the question is, is H98 Eurasian or not.


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@Swenet
@Tukuler

Tukuler tried to say earlier that because there was pastoralists in the Green Sahara who left rock art that they must have developed the LP trait. This is false. People can be pastoralists and have domesticated cattles for a long time (in the Green Sahara for example) and never developed the LP trait themselves. The 2 events are not related. That's the point I try to get into Tukuler's thick head while he tries to avoid the subject like an headless chicken.

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quote:
Originally posted by Amun-Ra The Ultimate:
Tukuler tried to say earlier that because there was pastoralists in the Green Sahara who left rock art that they must have developed the LP trait. This is false.

Go educate yourself, troll. You're in desperate
need of basic reading on African prehistory. Your
whiny protestations are redundant and emanate
from a place of complete ignorance and faked
knowledgeableness rather than a place of being
even remotely aware of the literature.

The occasional image even shows milking, said study researcher Julie Dunne, a doctoral student at the University of Bristol. But it's difficult to get a firm date for those images. By analyzing pottery fragments, Dunne and her colleagues have now shown that these early herders were not only milking their livestock, but also processing that milk into products like yogurt, cheese and butter.

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So? I know all about this. Population can use milk for their children, they can also process it through fermentation like yogurt which make it more easily digestible even for non LP-carriers, etc. Populations and individuals which are not LP carriers can still use cattle milk for different purpose. As well as using cattle for meat.
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Admit it. You messed up again. The age estimates of
of LP in certain Saharan populations coincides with
these finds. Ancient Egyptian records are also
teeming with attestations of the consumption of
(unprocessed) milk. Your whiny protestations are
redundant and emanate from a place of complete
ignorance and faked knowledgeableness rather than a
place of being even remotely aware of the literature.

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^^So Swenet like Tukuler you believe the T-13910 (European LP allele/gene) first appeared among the Fulani and was later transmitted to European people?
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the lioness,
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[QUOTE]Originally posted by Swenet:
[QB] Lioness? You seem able to think outside the box.

That's a high compliment but
I know little about this topic

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^ [Wink]

-----------------------

Not that I believe that it's African--not until I
see some evidence that the associated H98 haplotype
originated with Africans. But, that aside, I do
require evidence for this remarkable claim:

quote:
Originally posted by Amun-Ra The Ultimate:
T-13910 (European LP allele/gene)

One thing we can all be sure of is that there was
no European cattle domestication event, at least
not one that led to Europe-wide adoption of cattle
nor was there a neolithic Europe-wide reliance on
milk consumption or a neolithic Europe-wide LP
capacity. Where is the evidence that T-13910
originated in Europe?

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quote:
Originally posted by Swenet:
Not that I believe that it's African--not until I
see some evidence that the associated H98 haplotype
originated with Africans.

OK

quote:

But, that aside, I do
require evidence for this remarkable claim:

quote:
Originally posted by Amun-Ra The Ultimate:
T-13910 (European LP allele/gene)

One thing we can all be sure of is that there was
no European cattle domestication event, at least
not one that led to Europe-wide adoption of cattle
nor was there a neolithic Europe-wide reliance on
milk consumption or a neolithic Europe-wide LP
capacity. Where is the evidence that T-13910
originated in Europe? [/qb]

T-13910 is widely recognized as an European allele by biologist. Where do you think the T-13910 could have originated?
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the lioness,
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A recent paper

Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe
Annina Krüttli , Abigail Bouwman ,

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086251

Two hypotheses have been proposed to explain the origin of LP and its association with dairying: the culture-historical hypothesis [25] and the reverse cause hypothesis [26]. The culture-historical hypothesis posits that the LP allele arose from low frequency through selection in cultures with a long history of dairying. By contrast, the reverse-cause hypothesis holds that the LP allele may have already been common in certain populations due to genetic drift and only these populations would have adopted the cultural practice of dairying. Additional genetic pressures may have existed in arid climates where milk is one of the only clean sources of water [27] or in northern latitudes where, in the absence of vitamin D, the presence of lactose facilitates the absorption of calcium by the intestinal mucosa and thus reduces the risk of rickets and osteomalacia [28]. Rickets and osteomalacia can cause deformation of the pelvis and are leading causes of obstructed labor and consequent maternal mortality and perinatal morbidity in traditional societies without access to modern medical care [29].

Keeping cattle, sheep and goats not only for meat but also for milk provided important advantages for ancient societies. Milk contains high quality fat, protein and sugar and high amounts of calcium [30]. It is a clean liquid that can be converted into a variety of storable products that may have helped prehistoric people survive periods of scarcity [17]. It has been estimated that a prehistoric cow was able to produce 400–600 kg of milk in a lactation period of three to four months. Even after subtracting the 250–350 kg needed for the raising of a calf, 150–250 kg of milk would remain available for human consumption. The caloric content of this milk is almost equivalent to the meat of an entire cow, and it can be exploited multiple times throughout the animal's lifetime [31].


they are highest in northwestern Europe, gradually declining towards the southeast [6]. In western Central Europe (Germany and Austria), reported LP genotype (CT-13910 and TT-13910) frequencies range from 71–79.8% [7]–[11]. When and where the LP T-13910 polymorphism originated and the evolutionary processes by which it became the majority allele in Europe have been the subject of strong debate [12]–[24]. Because milk is the only natural source of lactose, it is thought that a culture of dairying must correlate with lactase persistence to some extent.

_________________________


Evershed RP, Payne S, Sherratt AG, Copley MS, Coolidge J, et al. (2008) Earliest date for milk use in the Near East and southeastern Europe linked to cattle herding. Nature 455: 528–531. doi: 10.1038/nature07180

http://www.nature.com/nature/journal/v455/n7212/full/nature07180.html

_____________________________________

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031279/

Malar J. 2011; 10: 9.
Published online Jan 14, 2011. doi: 10.1186/1475-2875-10-9
PMCID: PMC3031279
Lactase persistence genotypes and malaria susceptibility in Fulani of Mali

A Inkeri Lokki,

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